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How to use the TxDb.Hsapiens.UCSC.hg38.knownGene package in R?

Author: gene_x

Abstract: To use the TxDb.Hsapiens.UCSC.hg38.knownGene package in R, you will need to follow these steps: :joy: <https://www.markdownguide.org/basic-syntax/> <https://www.markdownguide.org/extended-syntax/>

libraries with a syntax similar to ggplot2 for creating 3D plots in R

Author: gene_x

Abstract: If you are looking for a library with a syntax similar to ggplot2 for creating 3D plots in R, you might want to check out the ggplot2 extension packages ggplot2_3d, ggplot2rayshader, or rayshader. H

bubble plots in R using ggplot2

Author: gene_x

Abstract: library(ggplot2) library(ggplot2) png("bubble_plot.png", 3000, 2000) ggplot(mydat, aes(y = Term, x = Comparison)) + geom_point(aes(color = Regulation, size = Count, alpha = abs(log10(FD

draw 2D PCA from rld

Author: gene_x

Abstract: library(ggplot2) data <- plotPCA(rld, intgroup=c("condition", "donor"), returnData=TRUE) ggplot(data, aes(x=PC1, y=PC2, color=condition, shape=donor)) + geom_point(size=8) + labs

Creating a 3D scatterplot using ggplot2 in R

Author: gene_x

Abstract: library(ggplot2) library(plotly) # Create some random data set.seed(123) x <- rnorm(100) y <- rnorm(100) z <- rnorm(100) # Perform PCA data <- data.frame(

The top 10 genes

Author: gene_x

Abstract: - TP53: The TP53 gene, also known as p53, is a tumor suppressor gene that plays a critical role in preventing cancer. Mutations in TP53 are present in up to 50% of all cancers and are associated with

R script, plotting a plot with categorical data, high light some points with different colors using ggplot2

Author: huang

Abstract: # load packages library(tidyverse) library(palmerpenguins) library(ggbeeswarm) library(ggforce) #remotes::install_github("allisonhorst/palmerpe

Staphylococcus aureus菌株背景对Sa3int噬菌体生命周期开关的影响

Author: huang

Abstract: Influence of Staphylococcus aureus Strain Background on Sa3int Phage Life Cycle Switches https://www.mdpi.com/1999-4915/14/11/2471 摘要 金黄色葡萄球菌无症状地寄生于哺乳动物的鼻腔,但也是危及生命的感染的主要原因。大多数人类鼻分离株携带Sa3噬菌体,它们会整合到

Mapping reads to a reference genome

Author: huang

Abstract: conda activate viral3 for sample in CSF_EH_RNA_S1; do java -jar /home/jhuang/Tools/Trimmomatic-0.36/trimmomatic-0.36.jar PE -threads 16 ./raw_data/${sample}_R1_001.fa

Bubble plot mit excel Tabelle als input

Author: huang

Abstract: lComparison;Category;GO ;Term;Count;GeneRatio;PValue;Genes;ListTotal;PopHits;PopTotal;FoldEnrichment;Bonferroni;Benjamini;FDR;Regulation LT vs ctrl d3;GOTERM_BP_DIRECT;GO:0006915;Apoptotic pro


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